WARNING: This page is about a different car, the 2005 Saturn Ion Red Line, 2005 Saturn Ion 3, 2005 Saturn Ion 2, and 2005 Saturn Ion 1. However, it is still accessible from the selected car via links, so may be relevant.
Remove the shift knob.
Unsnap the shift boot from the front console cupholder.
Pull the shift boot over the shift lever to remove.