Standard Procedure
WARNING: This page is about a different car, the 2009 Jeep Grand Cherokee. However, it is still accessible from the selected car via links, so may be relevant.
NOTE:
Any time the window is adjusted/removed, regulator replaced, and or motor replaced, the door module needs to be cleared and relearn (denormalize/normalize).
To clear/relearn (denormalize/normalize). Refer to Electrical/Power Windows - Standard Procedure .